Publications of Carlijn Lems

all all years 2026 2025 2024

Papers in international journals

  1. A. Bouwmeester, T. Gootzen, M. Nobbenhuis, V. Rudaitis, C. van den Berg, H. van Beekhuizen, L. Alcalá, D. Smedts, N. Visser, V. Verhoef, T. Jonges, R. Zweemer, A. Leon-Catillo, C. Lems, J. de Hullu, J. van der Laak, M. Steenbeek and M. Simons, "Additional sectioning and AI -assisted diagnosis reveal underdiagnosis of serous (pre)malignancies in fallopian tube specimen from BRCA 1/2 carriers", Histopathology, 2026.
    Abstract DOI

Preprints

  1. C. Lems, S. Moonemans, N. Klubíčková, B. Brattoli, T. Lee, S. Kim, V. Vilaplana, L. Pons, S. Hochman, M. Suárez-Franck, P. Fernandez, J. Drachneris, D. Petroska, R. Augulis, A. Laurinavicius, D. Oliveira, D. Montezuma, A. Bouwmeester, D. van Midden, A. Vos, S. Vos, J. van Ipenburg, M. Balkenhol, K. Winkler, I. Nagtegaal, K. Hebeda, U. Flucke, K. Grünberg, J. Skopal, B. Chohan, J. Temprana-Salvador, E. Munari, L. Cima, G. Querzoli, Y. Belisario, J. Faber, G. van Leenders, J. von der Thüsen, L. Brosens, R. de Krijger, P. Wesseling, S. Florquin, M. Maniewski, A. Kowalewski, R. Barna, D. Tiniakos, J. Gros, R. Donders, J. Maurits, M. Lu, C. Chen, F. Mahmood, J. van der Laak, N. Khalili, F. Meeuwsen and F. Ciompi, "DALPHIN: Benchmarking Digital Pathology AI Copilots Against Pathologists on an Open Multicentric Dataset", arXiv:2605.03544, 2026.
    Abstract DOI arXiv
  2. S. Moonemans, S. Ram, F. Meeuwsen, C. Lems, J. van der Laak, G. Litjens and F. Ciompi, "Democratising Pathology Co-Pilots: An Open Pipeline and Dataset for Whole-Slide Vision-Language Modelling", arXiv:2512.17326, 2026.
    arXiv
  3. C. Lems, L. Tessier, J. Bokhorst, M. van Rijthoven, W. Aswolinskiy, M. Pozzi, N. Klubickova, S. Dintzis, M. Campora, M. Balkenhol, P. Bult, J. Spronck, T. Detone, M. Barbareschi, E. Munari, G. Bogina, J. Wesseling, E. Lips, F. Ciompi, F. Meeuwsen and J. van der Laak, "A Multicentric Dataset for Training and Benchmarking Breast Cancer Segmentation in H&E Slides", arXiv:2510.02037, 2025.
    Abstract DOI arXiv

Papers in conference proceedings

  1. C. Lems, N. Klubíčková, B. Brattoli, T. Lee, S. Kim, V. Besler, P. Fernandez, L. Pons, A. Laurinavicius, J. Drachneris, D. Montezuma, D. Oliveira, S. Vos, M. Balkenhol, J. van Ipenburg, A. Vos, M. Poceviciute, N. Khalili and F. Ciompi, "Towards a multicentric open DigitAL PatHology assIstant beNchmark: Initial Results from the DALPHIN Study", Laboratory Investigation, 2025;105:103609.
    DOI
  2. C. Lems, D. Geijs, J. Bokhorst, M. Sülter, L. van Eekelen and F. Ciompi, "Color Deconvolution for Color-Agnostic and Cross-Modality Analysis of Immunohistochemistry Whole-Slide Images with Deep Learning", 2024 IEEE International Symposium on Biomedical Imaging (ISBI), 2024:1-4.
    DOI