Publications of Babak Ehteshami Bejnordi

Papers in international journals

  1. M. Mullooly, B. Ehteshami Bejnordi, R. Pfeiffer, S. Fan, M. Palakal, M. Hada, P. Vacek, D. Weaver, J. Shepherd, B. Fan, A. Mahmoudzadeh, J. Wang, S. Malkov, J. Johnson, S. Herschorn, B. Sprague, S. Hewitt, L. Brinton, N. Karssemeijer, J. van der Laak, A. Beck, M. Sherman and G. Gierach, "Application of convolutional neural networks to breast biopsies to delineate tissue correlates of mammographic breast density", NPJ Breast Cancer, 2019;5:43.
    Abstract DOI PMID Cited by ~1
  2. M. Veta, Y. Heng, N. Stathonikos, B. Bejnordi, F. Beca, T. Wollmann, K. Rohr, M. Shah, D. Wang, M. Rousson, M. Hedlund, D. Tellez, F. Ciompi, E. Zerhouni, D. Lanyi, M. Viana, V. Kovalev, V. Liauchuk, H. Phoulady, T. Qaiser, S. Graham, N. Rajpoot, E. Sjoblom, J. Molin, K. Paeng, S. Hwang, S. Park, Z. Jia, E. Chang, Y. Xu, A. Beck, P. van Diest and J. Pluim, "Predicting breast tumor proliferation from whole-slide images: the TUPAC16 challenge", Medical Image Analysis, 2019;54(5):111-121.
    Abstract DOI PMID Cited by ~56
  3. O. Geessink, A. Baidoshvili, J. Klaase, B. Ehteshami Bejnordi, G. Litjens, G. van Pelt, W. Mesker, I. Nagtegaal, F. Ciompi and J. van der Laak, "Computer aided quantification of intratumoral stroma yields an independent prognosticator in rectal cancer", Cellular Oncology, 2019:1-11.
    Abstract DOI PMID Cited by ~8
  4. P. Bándi, O. Geessink, Q. Manson, M. van Dijk, M. Balkenhol, M. Hermsen, B. Bejnordi, B. Lee, K. Paeng, A. Zhong, Q. Li, F. Zanjani, S. Zinger, K. Fukuta, D. Komura, V. Ovtcharov, S. Cheng, S. Zeng, J. Thagaard, A. Dahl, H. Lin, H. Chen, L. Jacobsson, M. Hedlund, M. Cetin, E. Halici, H. Jackson, R. Chen, F. Both, J. Franke, H. Kusters-Vandevelde, W. Vreuls, P. Bult, B. van Ginneken, J. van der Laak and G. Litjens, "From detection of individual metastases to classification of lymph node status at the patient level: the CAMELYON17 challenge", IEEE Transactions on Medical Imaging, 2018;38(2):550-560.
    Abstract DOI PMID Cited by ~54
  5. B. Ehteshami Bejnordi, M. Mullooly, R. Pfeiffer, S. Fan, P. Vacek, D. Weaver, S. Herschorn, L. Brinton, B. van Ginneken, N. Karssemeijer, A. Beck, G. Gierach, J. van der Laak and M. Sherman, "Using deep convolutional neural networks to identify and classify tumor-associated stroma in diagnostic breast biopsies", Modern Pathology, 2018;31(10):1502-1512.
    Abstract DOI PMID Cited by ~52
  6. G. Litjens, P. Bandi, B. Ehteshami Bejnordi, O. Geessink, M. Balkenhol, P. Bult, A. Halilovic, M. Hermsen, R. van de Loo, R. Vogels, Q. Manson, N. Stathonikos, A. Baidoshvili, P. van Diest, C. Wauters, M. van Dijk and J. van der Laak, "1399 H&E-stained sentinel lymph node sections of breast cancer patients: the CAMELYON dataset", GigaScience, 2018;7(6):1-8.
    Abstract DOI PMID Cited by ~48
  7. B. Bejnordi, G. Litjens and J. van der Laak, "Machine Learning Compared With Pathologist Assessment-Reply", Journal of the American Medical Association, 2018;319(16):1726.
    Abstract DOI PMID Cited by ~1
  8. B. Bejnordi, G. Zuidhof, M. Balkenhol, M. Hermsen, P. Bult, B. van Ginneken, N. Karssemeijer, G. Litjens and J. van der Laak, "Context-aware stacked convolutional neural networks for classification of breast carcinomas in whole-slide histopathology images", Journal of Medical Imaging, 2017;4(4):044504.
    Abstract DOI PMID Cited by ~75
  9. B. Ehteshami Bejnordi, M. Veta, P. van Diest, B. van Ginneken, N. Karssemeijer, G. Litjens, J. van der Laak, T. Consortium, M. Hermsen, Q. Manson, M. Balkenhol, O. Geessink, N. Stathonikos, M. van Dijk, P. Bult, F. Beca, A. Beck, D. Wang, A. Khosla, R. Gargeya, H. Irshad, A. Zhong, Q. Dou, Q. Li, H. Chen, H. Lin, P. Heng, C. Haß, E. Bruni, Q. Wong, U. Halici, M. Öner, R. Cetin-Atalay, M. Berseth, V. Khvatkov, A. Vylegzhanin, O. Kraus, M. Shaban, N. Rajpoot, R. Awan, K. Sirinukunwattana, T. Qaiser, Y. Tsang, D. Tellez, J. Annuscheit, P. Hufnagl, M. Valkonen, K. Kartasalo, L. Latonen, P. Ruusuvuori, K. Liimatainen, S. Albarqouni, B. Mungal, A. George, S. Demirci, N. Navab, S. Watanabe, S. Seno, Y. Takenaka, H. Matsuda, H. Ahmady Phoulady, V. Kovalev, A. Kalinovsky, V. Liauchuk, G. Bueno, M. Fernandez-Carrobles, I. Serrano, O. Deniz, D. Racoceanu and R. Venâncio, "Diagnostic Assessment of Deep Learning Algorithms for Detection of Lymph Node Metastases in Women With Breast Cancer", Journal of the American Medical Association, 2017;318(22):2199-2210.
    Abstract DOI PMID Cited by ~791
  10. G. Litjens, T. Kooi, B. Ehteshami Bejnordi, A. Setio, F. Ciompi, M. Ghafoorian, J. van der Laak, B. van Ginneken and C. Sánchez, "A Survey on Deep Learning in Medical Image Analysis", Medical Image Analysis, 2017;42:60-88.
    Abstract DOI PMID arXiv Cited by ~3681
  11. T. Mertzanidou, J. Hipwell, S. Reis, D. Hawkes, B. Bejnordi, M. Dalmis, S. Vreemann, B. Platel, J. van der Laak, N. Karssemeijer, M. Hermsen, P. Bult and R. Mann, "3D volume reconstruction from serial breast specimen radiographs for mapping between histology and 3D whole specimen imaging", Medical Physics, 2017;44(3):935-948.
    Abstract DOI PMID Cited by ~11
  12. B. Bejnordi, M. Balkenhol, G. Litjens, R. Holland, P. Bult, N. Karssemeijer and J. van der Laak, "Automated Detection of DCIS in Whole-Slide H&E Stained Breast Histopathology Images", IEEE Transactions on Medical Imaging, 2016;35(9):2141-2150.
    Abstract DOI PMID Cited by ~55
  13. B. Bejnordi, G. Litjens, N. Timofeeva, I. Otte-Holler, A. Homeyer, N. Karssemeijer and J. van der Laak, "Stain specific standardization of whole-slide histopathological images", IEEE Transactions on Medical Imaging, 2016;35(2):404-415.
    Abstract DOI PMID Cited by ~128

Papers in conference proceedings

  1. B. Bejnordi, J. Lin, B. Glass, M. Mullooly, G. Gierach, M. Sherman, N. Karssemeijer, J. van der Laak and A. Beck, "Deep learning-based assessment of tumor-associated stroma for diagnosing breast cancer in histopathology images", IEEE International Symposium on Biomedical Imaging, 2017:929-932.
    Abstract DOI PMID arXiv Cited by ~38
  2. F. Ciompi, O. Geessink, B. Bejnordi, G. de Souza, A. Baidoshvili, G. Litjens, B. van Ginneken, I. Nagtegaal and J. van der Laak, "The importance of stain normalization in colorectal tissue classification with convolutional networks", IEEE International Symposium on Biomedical Imaging, 2017:160-163.
    Abstract DOI arXiv Cited by ~75
  3. T. Mertzanidou, J. Hipwell, S. Reis, B. Bejnordi, M. Hermsen, M. Dalmis, S. Vreemann, B. Platel, J. van der Laak, N. Karssemeijer, R. Mann, P. Bult and D. Hawkes, "Whole Mastectomy Volume Reconstruction from 2D Radiographs and Its Mapping to Histology", Breast Imaging, 2016;9699:367-374.
    Abstract DOI Cited by ~3
  4. G. Litjens, B. Bejnordi, N. Timofeeva, G. Swadi, I. Kovacs, C. de Hulsbergen-van Kaa and J. van der Laak, "Automated detection of prostate cancer in digitized whole-slide images of H&E-stained biopsy specimens", Medical Imaging, 2015;9420:94200B.
    Abstract DOI
  5. B. Bejnordi, G. Litjens, M. Hermsen, N. Karssemeijer and J. van der Laak, "A multi-scale superpixel classification approach for region of interest detection in whole slide histopathology images", Medical Imaging, 2015;9420:94200H.
    Abstract DOI
  6. S. van de Leemput, F. Dorssers and B. Ehteshami Bejnordi, "A novel spherical shell filter for reducing false positives in automatic detection of pulmonary nodules in thoracic CT scans", Medical Imaging, 2015;9414:94142P.
    Abstract DOI
  7. Q. Mahmood, A. Chodorowski, B. Ehteshami Bejnordi and M. Persson, "A fully automatic unsupervised segmentation framework for the brain tissues in MR images", Medical Imaging, 2014.
    Abstract DOI
  8. B. Ehteshami Bejnordi, N. Timofeeva, I. Otte-Höller, N. Karssemeijer and J. van der Laak, "Quantitative analysis of stain variability in histology slides and an algorithm for standardization", Medical Imaging, 2014.
    Abstract DOI Cited by ~20
  9. B. Ehteshami Bejnordi, R. Moshavegh, K. Sujathan, P. Malm, E. Bengtsson and A. Mehnert, "Novel chromatin texture features for the classification of pap smears", Medical Imaging, 2013.
    Abstract DOI
  10. R. Moshavegh, B. Ehteshami Bejnordi, A. Mehnert, K. Sujathan, P. Malm and E. Bengtsson, "Automated segmentation of free-lying cell nuclei in Pap smears for malignancy-associated change analysis", Engineering in Medicine and Biology Society (EMBC), 2012.
    Abstract DOI

PhD theses

  1. B. Bejnordi, "Histopathological diagnosis of breast cancer using machine learning", 2017.
    Abstract Url