CHIMERA

Background

The CHIMERA Challenge aims to advance precision medicine in cancer care by addressing the critical need for multimodal data integration. Despite significant progress in AI, integrating transcriptomics, pathology, and radiology across clinical departments remains a complex challenge. Clinicians are faced with large, heterogeneous datasets that are difficult to analyze effectively. AI has the potential to unify multimodal data, but several technical barriers remain, such as defining appropriate fusion stages and handling missing modalities.

Aim

Unlike previous challenges focusing on single modalities, CHIMERA introduces a benchmark for multimodal AI models that integrates transcriptomics, histopathology, and radiology. CHIMERA includes prostate cancer and non-invasive bladder cancer (NIBC) datasets to improve recurrence prediction and optimize treatment strategies across three distinct tasks.

Prostate Cancer Recurrence Prediction (Task 1): Current assessments rely on PSA levels, a controversial biomarker with limited reliability in predicting biochemical recurrence. CHIMERA integrates multiparametric MRI and H&E-stained histopathology slides, routinely used in clinical practice, to enhance recurrence prediction. Deep learning has shown that morphological features in histopathology provide significant prognostic value.

Non-Invasive Bladder Cancer (NMIBC) Response Predictions (Task 2 and 3): 50% of NIBC patients fail to respond to BCG treatment, a globally scarce resource. Molecular RNA analysis has been linked to high-risk treatment response and can aid in early treatment decision-making. Integrating transcriptomics, pathology, and imaging can improve prognostic accuracy and patient management.

People

Catherine Chia

Catherine Chia

PhD Candidate

Robert Spaans

Robert Spaans

PhD Candidate

Tongjie Wang

Tongjie Wang

Postdoctoral Researcher

Farbod Khoraminia

Farbod Khoraminia

PhD Candidate

Khrystyna Faryna

Khrystyna Faryna

PhD Candidate

Maryam Mohammadlou

Maryam Mohammadlou

Visiting Researcher

Tahlita Zuiverloon

Tahlita Zuiverloon

Associate Professor, Urologist

Pathology, Erasmus University Medical Centre

Jean-Paul van Basten

Jean-Paul van Basten

Urologist

Urology, Canisius Wilhelmina Hospital

Sita Vermeulen

Sita Vermeulen

Associate Professor

Genetic Epidemiology, Radboudumc

Geert Litjens

Geert Litjens

Professor

Nadieh Khalili

Nadieh Khalili

Researcher in Talent Track

Adam Kowalewski

Adam Kowalewski

Visiting Researcher

Diagnostic Image Analysis Group

Parandzem Khachatryan

Parandzem Khachatryan

Visiting Researcher

Alberto Nakauma-González

Alberto Nakauma-González

Bioinformatician

Urology, Erasmus University Medical Centre

Domingos Oliveira

Domingos Oliveira

Anatomic Pathology Specialist

IMP Diagnostics